diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Cauchy.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Cauchy.java
index f316640b6f3d78f09dac706a26d94790e5bf5a36..29452d13c149ec4e743c597ffc7a99f6c42508fa 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Cauchy.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Cauchy.java
@@ -67,13 +67,13 @@ public final class Cauchy {
return RMath.mlError();
}
- x = (x - location) / scale;
- if (Double.isNaN(x)) {
+ double x2 = (x - location) / scale;
+ if (Double.isNaN(x2)) {
return RMath.mlError();
}
- if (!Double.isFinite(x)) {
- if (x < 0) {
+ if (!Double.isFinite(x2)) {
+ if (x2 < 0) {
return DPQ.rdt0(lowerTail, logP);
} else {
return DPQ.rdt1(lowerTail, logP);
@@ -81,7 +81,7 @@ public final class Cauchy {
}
if (!lowerTail) {
- x = -x;
+ x2 = -x2;
}
/*
@@ -91,18 +91,19 @@ public final class Cauchy {
// GnuR has #ifdef HAVE_ATANPI where it uses atanpi function, here we only implement the
// case when atanpi is not available for the moment
- if (fabs(x) > 1) {
- double y = Math.atan(1 / x) / M_PI;
- return (x > 0) ? DPQ.rdclog(y, logP) : DPQ.rdval(-y, logP);
+ if (fabs(x2) > 1) {
+ double y = Math.atan(1 / x2) / M_PI;
+ return (x2 > 0) ? DPQ.rdclog(y, logP) : DPQ.rdval(-y, logP);
} else {
- return DPQ.rdval(0.5 + Math.atan(x) / M_PI, logP);
+ return DPQ.rdval(0.5 + Math.atan(x2) / M_PI, logP);
}
}
}
public static final class QCauchy implements Function3_2 {
@Override
- public double evaluate(double p, double location, double scale, boolean lowerTail, boolean logP) {
+ public double evaluate(double pIn, double location, double scale, boolean lowerTailIn, boolean logP) {
+ double p = pIn;
if (Double.isNaN(p) || Double.isNaN(location) || Double.isNaN(scale)) {
return p + location + scale;
}
@@ -118,6 +119,7 @@ public final class Cauchy {
return RMath.mlError();
}
+ boolean lowerTail = lowerTailIn;
if (logP) {
if (p > -1) {
/*
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Exp.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Exp.java
index 0d3e6ecbc329391c74220746d77accc7919f6f49..e2cdac1583938382aa95390c34c6e4d0411515c2 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Exp.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Exp.java
@@ -53,20 +53,20 @@ public final class Exp {
public static final class PExp implements Function2_2 {
@Override
- public double evaluate(double x, double scale, boolean lowerTail, boolean logP) {
- if (Double.isNaN(x) || Double.isNaN(scale)) {
- return x + scale;
+ public double evaluate(double xIn, double scale, boolean lowerTail, boolean logP) {
+ if (Double.isNaN(xIn) || Double.isNaN(scale)) {
+ return xIn + scale;
}
if (scale < 0) {
return RMath.mlError();
}
- if (x <= 0.) {
+ if (xIn <= 0.) {
return DPQ.rdt0(lowerTail, logP);
}
/* same as weibull( shape = 1): */
- x = -(x / scale);
+ double x = -(xIn / scale);
return lowerTail ? (logP ? DPQ.rlog1exp(x) : -RMath.expm1(x)) : DPQ.rdexp(x, logP);
}
}
@@ -93,7 +93,6 @@ public final class Exp {
}
return -scale * DPQ.rdtclog(p, lowerTail, logP);
-
}
}
}
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/GammaFunctions.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/GammaFunctions.java
index 1638c38e2ce080d756db52c1c368bd0c9044230a..2a700e05a9605b176c60f1b734439fdcb02bb986 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/GammaFunctions.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/GammaFunctions.java
@@ -187,7 +187,7 @@ public abstract class GammaFunctions {
return 1 / (x * 12);
}
- static double lgamma(double x) {
+ static double lgamma(@SuppressWarnings("unused") double x) {
throw RError.nyi(RError.SHOW_CALLER, "lgamma from libc");
}
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/QHyper.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/QHyper.java
index c3a43d3259eba623afcabfc64774ea901a893bbf..9a54383f82decd95101bb995de5f6fe776e444f4 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/QHyper.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/QHyper.java
@@ -20,27 +20,19 @@ import static com.oracle.truffle.r.library.stats.RMath.lfastchoose;
import com.oracle.truffle.r.library.stats.DPQ.EarlyReturn;
public final class QHyper {
- public static double qhyper(double p, double nr, double nb, double n, boolean lowerTail, boolean logP) {
+ public static double qhyper(double pIn, double nrIn, double nbIn, double nIn, boolean lowerTail, boolean logP) {
/* This is basically the same code as ./phyper.c *used* to be --> FIXME! */
- double capN;
- double xstart;
- double xend;
- double xr;
- double xb;
- double sum;
- double term;
- boolean smallN;
- if (Double.isNaN(p) || Double.isNaN(nr) || Double.isNaN(nb) || Double.isNaN(n)) {
- return p + nr + nb + n;
+ if (Double.isNaN(pIn) || Double.isNaN(nrIn) || Double.isNaN(nbIn) || Double.isNaN(nIn)) {
+ return pIn + nrIn + nbIn + nIn;
}
- if (!Double.isFinite(p) || !Double.isFinite(nr) || !Double.isFinite(nb) || !Double.isFinite(n)) {
+ if (!Double.isFinite(pIn) || !Double.isFinite(nrIn) || !Double.isFinite(nbIn) || !Double.isFinite(nIn)) {
return RMath.mlError();
}
- nr = forceint(nr);
- nb = forceint(nb);
- capN = nr + nb;
- n = forceint(n);
+ double nr = forceint(nrIn);
+ double nb = forceint(nbIn);
+ double capN = nr + nb;
+ double n = forceint(nIn);
if (nr < 0 || nb < 0 || n < 0 || n > capN) {
return RMath.mlError();
}
@@ -50,24 +42,25 @@ public final class QHyper {
* - 1, NR,NB, n)
*/
- xstart = fmax2(0, n - nb);
- xend = fmin2(n, nr);
+ double xstart = fmax2(0, n - nb);
+ double xend = fmin2(n, nr);
+ double p = pIn;
try {
DPQ.rqp01boundaries(p, xstart, xend, lowerTail, logP);
} catch (EarlyReturn ex) {
return ex.result;
}
- xr = xstart;
- xb = n - xr; /* always ( = #{black balls in sample} ) */
+ double xr = xstart;
+ double xb = n - xr; /* always ( = #{black balls in sample} ) */
- smallN = (capN < 1000); /* won't have underflow in product below */
+ boolean smallN = (capN < 1000); /* won't have underflow in product below */
/*
* if N is small, term := product.ratio( bin.coef ); otherwise work with its Math.logarithm
* to protect against underflow
*/
- term = lfastchoose(nr, xr) + lfastchoose(nb, xb) - lfastchoose(capN, n);
+ double term = lfastchoose(nr, xr) + lfastchoose(nb, xb) - lfastchoose(capN, n);
if (smallN) {
term = Math.exp(term);
}
@@ -78,7 +71,7 @@ public final class QHyper {
p = DPQ.rdtqiv(p, lowerTail, logP);
}
p *= 1 - 1000 * DBL_EPSILON; /* was 64, but failed on FreeBSD sometimes */
- sum = smallN ? term : Math.exp(term);
+ double sum = smallN ? term : Math.exp(term);
while (sum < p && xr < xend) {
xr++;
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RBeta.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RBeta.java
index 5e1ce8ccb67f9fe4a5636c9194a4bcdf78437e24..714014b84e2fb45938f67394e8586fb4e360fee2 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RBeta.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RBeta.java
@@ -43,17 +43,8 @@ public final class RBeta extends RandFunction2_Double {
return 0.0;
}
- double a;
- double b;
- double r;
- double s;
- double t;
- double u1;
- double u2;
double v = 0;
double w = 0;
- double y;
- double z;
// TODO: state variables
double beta = 0;
@@ -71,8 +62,8 @@ public final class RBeta extends RandFunction2_Double {
oldb = bb;
}
- a = fmin2(aa, bb);
- b = fmax2(aa, bb); /* a <= b */
+ double a = fmin2(aa, bb);
+ double b = fmax2(aa, bb); /* a <= b */
double alpha = a + b;
if (a <= 1.0) { /* --- Algorithm BC --- */
@@ -85,10 +76,11 @@ public final class RBeta extends RandFunction2_Double {
}
/* FIXME: "do { } while()", but not trivially because of "continue"s: */
for (;;) {
- u1 = rand.unifRand();
- u2 = rand.unifRand();
+ double u1 = rand.unifRand();
+ double u2 = rand.unifRand();
+ double z;
if (u1 < 0.5) {
- y = u1 * u2;
+ double y = u1 * u2;
z = u1 * y;
if (0.25 * u2 + z - y >= k1) {
continue;
@@ -97,7 +89,7 @@ public final class RBeta extends RandFunction2_Double {
z = u1 * u1 * u2;
if (z <= 0.25) {
v = beta * Math.log(u1 / (1.0 - u1));
- w = wFromU1Bet(b, v, w);
+ w = wFromU1Bet(b, v);
break;
}
if (z >= k2) {
@@ -106,7 +98,7 @@ public final class RBeta extends RandFunction2_Double {
}
v = beta * Math.log(u1 / (1.0 - u1));
- w = wFromU1Bet(b, v, w);
+ w = wFromU1Bet(b, v);
if (alpha * (Math.log(alpha / (a + w)) + v) - 1.3862944 >= Math.log(z)) {
break;
@@ -120,16 +112,18 @@ public final class RBeta extends RandFunction2_Double {
beta = Math.sqrt((alpha - 2.0) / (2.0 * a * b - alpha));
gamma = a + 1.0 / beta;
}
+ double r;
+ double t;
do {
- u1 = rand.unifRand();
- u2 = rand.unifRand();
+ double u1 = rand.unifRand();
+ double u2 = rand.unifRand();
v = beta * Math.log(u1 / (1.0 - u1));
- w = wFromU1Bet(a, v, w);
+ w = wFromU1Bet(a, v);
- z = u1 * u1 * u2;
+ double z = u1 * u1 * u2;
r = gamma * v - 1.3862944;
- s = a + r - w;
+ double s = a + r - w;
if (s + 2.609438 >= 5.0 * z) {
break;
}
@@ -143,16 +137,13 @@ public final class RBeta extends RandFunction2_Double {
}
}
- private static double wFromU1Bet(double aa, double v, double w) {
+ private static double wFromU1Bet(double aa, double v) {
if (v <= expmax) {
- w = aa * Math.exp(v);
- if (!Double.isFinite(w)) {
- w = Double.MAX_VALUE;
- }
+ double result = aa * Math.exp(v);
+ return Double.isFinite(result) ? result : Double.MAX_VALUE;
} else {
- w = Double.MAX_VALUE;
+ return Double.MAX_VALUE;
}
- return w;
}
}
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RHyper.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RHyper.java
index 7af8863b92164203fd5a0d8ccf56771a7d0e940b..4cd77bcd0f57d21cd29bf67ae35f76dffd84e88a 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RHyper.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RHyper.java
@@ -34,7 +34,7 @@ public final class RHyper extends RandFunction3_Double {
/*
* 10.60460290274525022841722740072165, approx. value below = 10.6046028788027;
* rel.error = 2.26 10^{-9}
- *
+ *
* FIXME: Use constants and if(n > ..) decisions from ./stirlerr.c ----- will be
* even *faster* for n > 500 (or so)
*/
@@ -90,12 +90,7 @@ public final class RHyper extends RandFunction3_Double {
public double execute(double nn1in, double nn2in, double kkin, RandomNumberProvider rand) {
/* extern double afc(int); */
- int nn1;
- int nn2;
- int kk;
int ix; // return value (coerced to double at the very end)
- boolean setup1;
- boolean setup2;
/* check parameter validity */
@@ -103,30 +98,32 @@ public final class RHyper extends RandFunction3_Double {
return RMath.mlError();
}
- nn1in = forceint(nn1in);
- nn2in = forceint(nn2in);
- kkin = forceint(kkin);
+ double nn1int = forceint(nn1in);
+ double nn2int = forceint(nn2in);
+ double kkint = forceint(kkin);
- if (nn1in < 0 || nn2in < 0 || kkin < 0 || kkin > nn1in + nn2in) {
+ if (nn1int < 0 || nn2int < 0 || kkint < 0 || kkint > nn1int + nn2int) {
return RMath.mlError();
}
- if (nn1in >= Integer.MAX_VALUE || nn2in >= Integer.MAX_VALUE || kkin >= Integer.MAX_VALUE) {
+ if (nn1int >= Integer.MAX_VALUE || nn2int >= Integer.MAX_VALUE || kkint >= Integer.MAX_VALUE) {
/*
* large n -- evade integer overflow (and inappropriate algorithms) --------
*/
// FIXME: Much faster to give rbinom() approx when appropriate; -> see Kuensch(1989)
// Johnson, Kotz,.. p.258 (top) mention the *four* different binomial approximations
- if (kkin == 1.) { // Bernoulli
- return rbinom.execute(kkin, nn1in / (nn1in + nn2in), rand);
+ if (kkint == 1.) { // Bernoulli
+ return rbinom.execute(kkint, nn1int / (nn1int + nn2int), rand);
}
// Slow, but safe: return F^{-1}(U) where F(.) = phyper(.) and U ~ U[0,1]
- return QHyper.qhyper(rand.unifRand(), nn1in, nn2in, kkin, false, false);
+ return QHyper.qhyper(rand.unifRand(), nn1int, nn2int, kkint, false, false);
}
- nn1 = (int) nn1in;
- nn2 = (int) nn2in;
- kk = (int) kkin;
+ int nn1 = (int) nn1int;
+ int nn2 = (int) nn2int;
+ int kk = (int) kkint;
/* if new parameter values, initialize */
+ boolean setup1;
+ boolean setup2;
if (nn1 != n1s || nn2 != n2s) {
setup1 = true;
setup2 = true;
@@ -352,11 +349,11 @@ public final class RHyper extends RandFunction3_Double {
if ((double) nn1 > (double) nn2) {
ix1 = (double) kk - (double) nn2 + ix1;
} else {
- ix1 = (double) nn1 - ix1;
+ ix1 = nn1 - ix1;
}
} else {
if ((double) nn1 > (double) nn2) {
- ix1 = (double) kk - ix1;
+ ix1 = kk - ix1;
}
}
return ix1;
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMath.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMath.java
index 7b0d2a4c0dc0e158da8cfad77148cfff9c3028fe..02c61643311c94b45c6edeba1b1555115af402b4 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMath.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMath.java
@@ -66,14 +66,14 @@ public class RMath {
return mlError();
}
- x = fmod(x, 1.); // tan(pi(x + k)) == tan(pi x) for all integer k
+ double x2 = fmod(x, 1.); // tan(pi(x + k)) == tan(pi x) for all integer k
// map (-1,1) --> (-1/2, 1/2] :
- if (x <= -0.5) {
- x++;
- } else if (x > 0.5) {
- x--;
+ if (x2 <= -0.5) {
+ x2++;
+ } else if (x2 > 0.5) {
+ x2--;
}
- return (x == 0.) ? 0. : ((x == 0.5) ? Double.NaN : Math.tan(MathConstants.M_PI * x));
+ return (x2 == 0.) ? 0. : ((x2 == 0.5) ? Double.NaN : Math.tan(MathConstants.M_PI * x2));
}
//
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMultinom.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMultinom.java
index 8480bde3c0db7647e925bf2254fff2c68d00e5e9..52c76f87a8fa089e9184d9301de96772bc4f842c 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMultinom.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RMultinom.java
@@ -13,10 +13,10 @@
package com.oracle.truffle.r.library.stats;
import static com.oracle.truffle.r.nodes.builtin.CastBuilder.Predef.notIntNA;
+import static com.oracle.truffle.r.runtime.RError.SHOW_CALLER;
import static com.oracle.truffle.r.runtime.RError.Message.NA_IN_PROB_VECTOR;
import static com.oracle.truffle.r.runtime.RError.Message.NEGATIVE_PROBABILITY;
import static com.oracle.truffle.r.runtime.RError.Message.NO_POSITIVE_PROBABILITIES;
-import static com.oracle.truffle.r.runtime.RError.SHOW_CALLER;
import java.math.BigDecimal;
import java.math.RoundingMode;
@@ -115,9 +115,7 @@ public abstract class RMultinom extends RExternalBuiltinNode.Arg3 {
* prob[j]) , sum_j rN[j] == n, sum_j prob[j] == 1.
*/
@TruffleBoundary
- private boolean rmultinom(int n, double[] prob, int maxK, int[] rN, int rnStartIdx, RandomNumberProvider rand) {
- int k;
- double pp;
+ private boolean rmultinom(int nIn, double[] prob, int maxK, int[] rN, int rnStartIdx, RandomNumberProvider rand) {
BigDecimal pTot = BigDecimal.ZERO;
/*
* This calculation is sensitive to exact values, so we try to ensure that the calculations
@@ -125,6 +123,7 @@ public abstract class RMultinom extends RExternalBuiltinNode.Arg3 {
* result.
*/
+ int n = nIn;
if (RRuntime.isNA(maxK) || maxK < 1 || RRuntime.isNA(n) || n < 0) {
if (rN.length > rnStartIdx) {
rN[rnStartIdx] = RRuntime.INT_NA;
@@ -136,8 +135,8 @@ public abstract class RMultinom extends RExternalBuiltinNode.Arg3 {
* Note: prob[K] is only used here for checking sum_k prob[k] = 1 ; Could make loop one
* shorter and drop that check !
*/
- for (k = 0; k < maxK; k++) {
- pp = prob[k];
+ for (int k = 0; k < maxK; k++) {
+ double pp = prob[k];
if (!Double.isFinite(pp) || pp < 0. || pp > 1.) {
rN[rnStartIdx + k] = RRuntime.INT_NA;
return false;
@@ -158,12 +157,12 @@ public abstract class RMultinom extends RExternalBuiltinNode.Arg3 {
}
/* Generate the first K-1 obs. via binomials */
- for (k = 0; k < maxK - 1; k++) { /* (p_tot, n) are for "remaining binomial" */
+ for (int k = 0; k < maxK - 1; k++) { /* (p_tot, n) are for "remaining binomial" */
BigDecimal probK = new BigDecimal(prob[k]);
if (probK.compareTo(BigDecimal.ZERO) != 0) {
- pp = probK.divide(pTot, RoundingMode.HALF_UP).doubleValue();
+ double pp = probK.divide(pTot, RoundingMode.HALF_UP).doubleValue();
// System.out.printf("[%d] %.17f\n", k + 1, pp);
- rN[rnStartIdx + k] = ((pp < 1.) ? (int) rbinom.execute((double) n, pp, rand) :
+ rN[rnStartIdx + k] = ((pp < 1.) ? (int) rbinom.execute(n, pp, rand) :
/* >= 1; > 1 happens because of rounding */
n);
n -= rN[rnStartIdx + k];
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RNbinomMu.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RNbinomMu.java
index 03118361e216015b5a02094b8c0cb0255036da12..cfbb7798c6594f952c5b6f7ce9a5935a1c6cb800 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RNbinomMu.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RNbinomMu.java
@@ -18,13 +18,11 @@ public final class RNbinomMu extends RandFunction2_Double {
private final RGamma rgamma = new RGamma();
@Override
- public double execute(double size, double mu, RandomNumberProvider rand) {
- if (!Double.isFinite(mu) || Double.isNaN(size) || size <= 0 || mu < 0) {
+ public double execute(double initialSize, double mu, RandomNumberProvider rand) {
+ if (!Double.isFinite(mu) || Double.isNaN(initialSize) || initialSize <= 0 || mu < 0) {
return RMath.mlError();
}
- if (!Double.isFinite(size)) {
- size = Double.MAX_VALUE / 2.;
- }
+ double size = Double.isFinite(initialSize) ? initialSize : Double.MAX_VALUE / 2.;
return (mu == 0) ? 0 : RPois.rpois(rgamma.execute(size, mu / size, rand), rand);
}
}
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RPois.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RPois.java
index 397cd4f7a7b437a580af80d175f0318d18432b15..420a81dc44c6cbcef837c9bec66befe439a58145 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RPois.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RPois.java
@@ -131,7 +131,7 @@ public final class RPois extends RandFunction1_Double {
if (l != 0) {
for (k = (u <= 0.458) ? 1 : Math.min(l, m); k <= l; k++) {
if (u <= pp[k]) {
- return (double) k;
+ return k;
}
}
if (l == 35) { /* u > pp[35] */
@@ -149,7 +149,7 @@ public final class RPois extends RandFunction1_Double {
pp[k] = q;
if (u <= q) {
l = k;
- return (double) k;
+ return k;
}
}
l = 35;
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RandGenerationFunctions.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RandGenerationFunctions.java
index 2bdaeeef565e8154753a5c4b561d1e56db0d6bd1..19717a9b865e7c364a7b4c24cc8de51b0e1824a1 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RandGenerationFunctions.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/RandGenerationFunctions.java
@@ -188,6 +188,7 @@ public final class RandGenerationFunctions {
return result;
}
+ @SuppressWarnings("unused")
Object evaluate(int length, RAbstractDoubleVector a, RAbstractDoubleVector b, RAbstractDoubleVector c, RandGenerationNodeData nodeData, RandomNumberProvider randProvider) {
// DSL generates code for this class too, with abstract method it would not compile
throw RInternalError.shouldNotReachHere("must be overridden");
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Signrank.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Signrank.java
index a6747c5660a3a8f134c1f57246f02008e5f560ce..9a976a351a50fa1ce7b5e8c1a92374859afa329a 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Signrank.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Signrank.java
@@ -23,21 +23,17 @@ public final class Signrank {
public static final class RSignrank extends RandFunction1_Double {
@Override
- public double execute(double n, RandomNumberProvider rand) {
- int i;
- int k;
- double r;
-
- if (Double.isNaN(n)) {
- return n;
+ public double execute(double nIn, RandomNumberProvider rand) {
+ if (Double.isNaN(nIn)) {
+ return nIn;
}
- if (Double.isInfinite(n)) {
+ if (Double.isInfinite(nIn)) {
// In GnuR these "results" seem to be generated due to the behaviour of R_forceint,
// and the "(int) n" cast, which ends up casting +/-infinity to integer...
- return n < 0 ? RMath.mlError() : 0;
+ return nIn < 0 ? RMath.mlError() : 0;
}
- n = forceint(n);
+ double n = forceint(nIn);
if (n < 0) {
return RMath.mlError();
}
@@ -45,9 +41,9 @@ public final class Signrank {
if (n == 0) {
return 0;
}
- r = 0.0;
- k = (int) n;
- for (i = 0; i < k; i++) {
+ double r = 0.0;
+ int k = (int) n;
+ for (int i = 0; i < k; i++) {
r += (i + 1) * Math.floor(rand.unifRand() + 0.5);
}
return r;
diff --git a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Wilcox.java b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Wilcox.java
index acf8b5555f4b196401ecdf46965206a71ca1ff90..85ba6659908e2ab0748b1ff367a249906258f31a 100644
--- a/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Wilcox.java
+++ b/com.oracle.truffle.r.library/src/com/oracle/truffle/r/library/stats/Wilcox.java
@@ -25,24 +25,24 @@ public final class Wilcox {
public static final class RWilcox extends RandFunction2_Double {
@Override
- public double execute(double m, double n, RandomNumberProvider rand) {
+ public double execute(double mIn, double nIn, RandomNumberProvider rand) {
int i;
int j;
int k;
double r;
/* NaNs propagated correctly */
- if (Double.isNaN(m) || Double.isNaN(n)) {
- return (m + n);
+ if (Double.isNaN(mIn) || Double.isNaN(nIn)) {
+ return mIn + nIn;
}
- if (!Double.isFinite(m) || !Double.isFinite(n)) {
+ if (!Double.isFinite(mIn) || !Double.isFinite(nIn)) {
// GnuR does not check this and tries to allocate the memory, we do check this, but
// fail with the same error message for compatibility reasons.
throw RError.error(RError.SHOW_CALLER, CALLOC_COULD_NOT_ALLOCATE_INF);
}
- m = Math.round(m);
- n = Math.round(n);
+ double m = Math.round(mIn);
+ double n = Math.round(nIn);
if ((m < 0) || (n < 0)) {
// TODO: for some reason the macro in GNUR here returns NA instead of NaN...
// return StatsUtil.mlError();
diff --git a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Attr.java b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Attr.java
index 10853a996c8aee8f4c672122aeb90f4cee0f4ebd..24c88dbad40e8401ec50cd0d3ab5f9ce93d6673c 100644
--- a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Attr.java
+++ b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Attr.java
@@ -49,7 +49,6 @@ import com.oracle.truffle.r.runtime.RRuntime;
import com.oracle.truffle.r.runtime.Utils;
import com.oracle.truffle.r.runtime.builtins.RBuiltin;
import com.oracle.truffle.r.runtime.data.RAttributable;
-import com.oracle.truffle.r.runtime.data.RAttributeProfiles;
import com.oracle.truffle.r.runtime.data.RAttributesLayout;
import com.oracle.truffle.r.runtime.data.RDataFactory;
import com.oracle.truffle.r.runtime.data.RInteger;
diff --git a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Combine.java b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Combine.java
index 99f09dcce3d563e95b0a3292e91bb7de0395d97e..1c53a2a22f3c49d902566448a343248d18502451 100644
--- a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Combine.java
+++ b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Combine.java
@@ -68,7 +68,6 @@ import com.oracle.truffle.r.runtime.RError;
import com.oracle.truffle.r.runtime.RRuntime;
import com.oracle.truffle.r.runtime.builtins.RBuiltin;
import com.oracle.truffle.r.runtime.data.RArgsValuesAndNames;
-import com.oracle.truffle.r.runtime.data.RAttributeProfiles;
import com.oracle.truffle.r.runtime.data.RAttributesLayout;
import com.oracle.truffle.r.runtime.data.RDataFactory;
import com.oracle.truffle.r.runtime.data.RLanguage;
@@ -458,7 +457,6 @@ public abstract class Combine extends RBuiltinNode {
@NodeChild
protected abstract static class CombineInputCast extends RNode {
- private final RAttributeProfiles attrProfiles = RAttributeProfiles.create();
@Child private GetDimNamesAttributeNode getDimNamesNode = GetDimNamesAttributeNode.create();
@Child private GetNamesAttributeNode getNamesNode = GetNamesAttributeNode.create();
diff --git a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Drop.java b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Drop.java
index 7104921f0dc2c92786597d31e9c707f6fadf5f1c..bb060fb21b0ac5b918907432c43338dc83c381b9 100644
--- a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Drop.java
+++ b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Drop.java
@@ -36,7 +36,6 @@ import com.oracle.truffle.r.nodes.attributes.SpecialAttributesFunctions.SetDimNa
import com.oracle.truffle.r.nodes.attributes.SpecialAttributesFunctions.SetNamesAttributeNode;
import com.oracle.truffle.r.nodes.builtin.RBuiltinNode;
import com.oracle.truffle.r.runtime.builtins.RBuiltin;
-import com.oracle.truffle.r.runtime.data.RAttributeProfiles;
import com.oracle.truffle.r.runtime.data.RDataFactory;
import com.oracle.truffle.r.runtime.data.RList;
import com.oracle.truffle.r.runtime.data.RStringVector;
@@ -47,7 +46,6 @@ import com.oracle.truffle.r.runtime.data.model.RAbstractVector;
public abstract class Drop extends RBuiltinNode {
private final ConditionProfile nullDimensions = ConditionProfile.createBinaryProfile();
- private final RAttributeProfiles dimNamesAttrProfile = RAttributeProfiles.create();
private final ConditionProfile resultIsVector = ConditionProfile.createBinaryProfile();
private final ConditionProfile resultIsScalarProfile = ConditionProfile.createBinaryProfile();
private final ConditionProfile noDimNamesProfile = ConditionProfile.createBinaryProfile();
diff --git a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Sprintf.java b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Sprintf.java
index 2f1abb16b37e693639d363d1bbbc79e6e41a5e40..99d18142da4efbbeff608c53fbf2b8cabc9b265c 100644
--- a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Sprintf.java
+++ b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/Sprintf.java
@@ -52,7 +52,7 @@ public abstract class Sprintf extends RBuiltinNode {
@Child private Sprintf sprintfRecursive;
@Specialization
- protected RStringVector sprintf(RAbstractStringVector fmt, @SuppressWarnings("unused") RNull x) {
+ protected RStringVector sprintf(@SuppressWarnings("unused") RAbstractStringVector fmt, @SuppressWarnings("unused") RNull x) {
return RDataFactory.createEmptyStringVector();
}
diff --git a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/UpdateClass.java b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/UpdateClass.java
index 094f7fb3b8b052cc251da25e495c326f181a1cf3..1133d63fa879b46b5bba99865a40c045c87690ab 100644
--- a/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/UpdateClass.java
+++ b/com.oracle.truffle.r.nodes.builtin/src/com/oracle/truffle/r/nodes/builtin/base/UpdateClass.java
@@ -18,7 +18,6 @@ import com.oracle.truffle.api.CompilerDirectives;
import com.oracle.truffle.api.CompilerDirectives.TruffleBoundary;
import com.oracle.truffle.api.dsl.Cached;
import com.oracle.truffle.api.dsl.Specialization;
-import com.oracle.truffle.api.profiles.BranchProfile;
import com.oracle.truffle.r.nodes.attributes.SpecialAttributesFunctions.SetClassAttributeNode;
import com.oracle.truffle.r.nodes.attributes.TypeFromModeNode;
import com.oracle.truffle.r.nodes.binary.CastTypeNode;
diff --git a/com.oracle.truffle.r.nodes/src/com/oracle/truffle/r/nodes/access/vector/PositionCheckSubscriptNode.java b/com.oracle.truffle.r.nodes/src/com/oracle/truffle/r/nodes/access/vector/PositionCheckSubscriptNode.java
index 6aa4578656348d2c47e4ea9f19d82418716a06af..bc43a33bc3f77f8bb4bdec0c85238637caa52577 100644
--- a/com.oracle.truffle.r.nodes/src/com/oracle/truffle/r/nodes/access/vector/PositionCheckSubscriptNode.java
+++ b/com.oracle.truffle.r.nodes/src/com/oracle/truffle/r/nodes/access/vector/PositionCheckSubscriptNode.java
@@ -31,7 +31,6 @@ import com.oracle.truffle.r.runtime.RError;
import com.oracle.truffle.r.runtime.RError.Message;
import com.oracle.truffle.r.runtime.RRuntime;
import com.oracle.truffle.r.runtime.RType;
-import com.oracle.truffle.r.runtime.data.RAttributeProfiles;
import com.oracle.truffle.r.runtime.data.RDataFactory;
import com.oracle.truffle.r.runtime.data.RInteger;
import com.oracle.truffle.r.runtime.data.RMissing;
@@ -48,8 +47,6 @@ abstract class PositionCheckSubscriptNode extends PositionCheckNode {
private final boolean recursive;
- private final RAttributeProfiles attributeProfile = RAttributeProfiles.create();
-
PositionCheckSubscriptNode(ElementAccessMode mode, RType containerType, Object positionValue, int dimensionIndex, int numDimensions, boolean exact, boolean assignment, boolean recursive) {
super(mode, containerType, positionValue, dimensionIndex, numDimensions, exact, assignment);
this.recursive = recursive;
diff --git a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_array.java b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_array.java
index f3d72b9a76b32238317d54dcd86a78a788e09ede..c59d7c4c04748914777a44ed2f9dac95b652b373 100644
--- a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_array.java
+++ b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_array.java
@@ -70,8 +70,7 @@ public class TestBuiltin_array extends TestBase {
@Test
public void testarray11() {
- assertEval(Ignored.Unknown,
- "argv <- list(list(NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL), 8L, list(c('1', '2', '3', '4', '5', '6', '7', '8'))); .Internal(array(argv[[1]], argv[[2]], argv[[3]]))");
+ assertEval("argv <- list(list(NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL), 8L, list(c('1', '2', '3', '4', '5', '6', '7', '8'))); .Internal(array(argv[[1]], argv[[2]], argv[[3]]))");
}
@Test
diff --git a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_identical.java b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_identical.java
index d2fdc75685a637c5ee7d4bb80484fef5a580ecc2..83259357950962b4bcd8cebdc2140aa8955902e2 100644
--- a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_identical.java
+++ b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_identical.java
@@ -154,7 +154,7 @@ public class TestBuiltin_identical extends TestBase {
@Test
public void testidentical28() {
- assertEval(Ignored.Unknown,
+ assertEval(Ignored.Unstable,
"argv <- list(structure(list(x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1), y = c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10), fac = structure(c(1L, 3L, 2L, 3L, 3L, 1L, 2L, 3L, 2L, 2L), .Label = c('A', 'B', 'C'), class = 'factor')), .Names = c('x', 'y', 'fac'), row.names = c(NA, -10L), class = 'data.frame'), structure(list(x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1), y = c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10), fac = structure(c(1L, 3L, 2L, 3L, 3L, 1L, 2L, 3L, 2L, 2L), .Label = c('A', 'B', 'C'), class = 'factor')), .Names = c('x', 'y', 'fac'), row.names = c(NA, 10L), class = 'data.frame'), TRUE, TRUE, TRUE, TRUE, FALSE); .Internal(identical(argv[[1]], argv[[2]], argv[[3]], argv[[4]], argv[[5]], argv[[6]], argv[[7]]))");
}
diff --git a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_strsplit.java b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_strsplit.java
index 3a060acb8ddaf346b119d28ca8af4104351bf311..f6d29dc8ce187711d5ca431f2ccac8c2555620b8 100644
--- a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_strsplit.java
+++ b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_strsplit.java
@@ -29,8 +29,7 @@ public class TestBuiltin_strsplit extends TestBase {
@Test
public void teststrsplit3() {
- assertEval(Ignored.Unknown,
- "argv <- list(' \\036 isSeekable() now returns FALSE on connections which have non-default encoding. Although documented to record if ‘in principle’ the connection supports seeking, it seems safer to report FALSE when it may not work.', '[ \\t\\n]', FALSE, TRUE, FALSE); .Internal(strsplit(argv[[1]], argv[[2]], argv[[3]], argv[[4]], argv[[5]]))");
+ assertEval("argv <- list(' \\036 isSeekable() now returns FALSE on connections which have non-default encoding. Although documented to record if ‘in principle’ the connection supports seeking, it seems safer to report FALSE when it may not work.', '[ \\t\\n]', FALSE, TRUE, FALSE); .Internal(strsplit(argv[[1]], argv[[2]], argv[[3]], argv[[4]], argv[[5]]))");
}
@Test
diff --git a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_unclass.java b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_unclass.java
index df73382e61060130120eaf3ab39e07285da7f5eb..7dd8dbaa17e66d79719e805bcd25e3842af19f36 100644
--- a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_unclass.java
+++ b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/builtins/TestBuiltin_unclass.java
@@ -150,7 +150,7 @@ public class TestBuiltin_unclass extends TestBase {
@Test
public void testunclass26() {
- assertEval(Ignored.Unknown, "argv <- list(structure(list(a = 1), .Dim = 1L, .Dimnames = list('a')));unclass(argv[[1]]);");
+ assertEval("argv <- list(structure(list(a = 1), .Dim = 1L, .Dimnames = list('a')));unclass(argv[[1]]);");
}
@Test
diff --git a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/library/stats/TestExternal_rnbinom.java b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/library/stats/TestExternal_rnbinom.java
index c8385786a2adca7b6873fd5f998a489dbdc135a4..1da764331667df2230c83d2f9385eb8354099e25 100644
--- a/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/library/stats/TestExternal_rnbinom.java
+++ b/com.oracle.truffle.r.test/src/com/oracle/truffle/r/test/library/stats/TestExternal_rnbinom.java
@@ -32,6 +32,6 @@ public class TestExternal_rnbinom extends TestBase {
public void testRbinomWithMu() {
assertEval("set.seed(42); rnbinom(5, 1, mu=2)");
// TODO: maybe problem with state variables, see RNbinomMu
- assertEval(Ignored.Unimplemented, "set.seed(42); rnbinom(100, c(-1, 0, 1, 0.8, 10, NA, NaN, 1/0, -1/0), mu=c(-1, 0, 1, 0.8, 3, 10, NA, NaN, 1/0, -1/0))");
+ assertEval(Ignored.Unstable, "set.seed(42); rnbinom(100, c(-1, 0, 1, 0.8, 10, NA, NaN, 1/0, -1/0), mu=c(-1, 0, 1, 0.8, 3, 10, NA, NaN, 1/0, -1/0))");
}
}