visibility fixes

...c/com/oracle/truffle/r/nodes/builtin/RBuiltinPackage.java

...om/oracle/truffle/r/nodes/builtin/base/FileFunctions.java

...n/src/com/oracle/truffle/r/nodes/builtin/base/Format.java

.../src/com/oracle/truffle/r/nodes/builtin/base/Sprintf.java

...rc/com/oracle/truffle/r/nodes/builtin/base/Structure.java

...le/truffle/r/nodes/builtin/fastr/FastRCompileBuiltin.java

...rc/com/oracle/truffle/r/nodes/access/AccessArrayNode.java

.../com/oracle/truffle/r/nodes/access/ArrayPositionCast.java

...c/com/oracle/truffle/r/nodes/access/ReadVariableNode.java

...r.nodes/src/com/oracle/truffle/r/nodes/access/Symbol.java

.../oracle/truffle/r/nodes/access/UpdateArrayHelperNode.java

...c/com/oracle/truffle/r/nodes/builtin/RBuiltinFactory.java

...r/src/com/oracle/truffle/r/parser/ast/AssignVariable.java

....r.parser/src/com/oracle/truffle/r/parser/ast/Symbol.java

.../src/com/oracle/truffle/r/parser/tools/PrettyPrinter.java

...ser/src/com/oracle/truffle/r/parser/tools/TreeViewer.java

...runtime/src/com/oracle/truffle/r/runtime/RCmdOptions.java

....r.runtime/src/com/oracle/truffle/r/runtime/RDeparse.java

...r.runtime/src/com/oracle/truffle/r/runtime/RPackages.java

...src/com/oracle/truffle/r/runtime/data/RComplexVector.java