Externals implemented: {p/q/d/r}nbinom, and {p/q/d}nbinom_mu

- use RMathError
- fix format String in debugging messages
- move methods from GammaFunctions to RMath
- fix javadoc in QuantileSearch

getCanonicalFile() removes any '..' from the path. Some IDEs (intellij) put
'..' into StandardLocation.SOURCE_OUTPUT. With '..' the getParentFile() does
not work as intended.

+ small fix in RErrorHandling: when max number of warnings is reached, do not
report the actual number, but the max (like GnuR does).

Provide parameter values for each distribution separately +
honor semantics of common parameters like probability in [0,1] etc.

Few minor fixes of bugs discovered along the way.

Plus 'pgamma' external implemented.

+ necessary DPQ/RMath methods
+ move all XChisq to Chisq.java

rffi: C, Call, Grid, Lapack, PCRE, RAppl, STats, Tools, UserRNG as Truffle Node; refactor ForeignFunctions to keep C/Fortran together